# Quasispecies dynamics in arbovirus persistence emergence and fitness

> **NIH NIH R01** · COLORADO STATE UNIVERSITY · 2021 · $375,139

## Abstract

Local, site-specific characteristics largely control the transmission dynamics of arthropod-borne viruses
(arboviruses). Arboviruses, in turn, adapt to local conditions, maximizing their potential to perpetuate and
emerge as health threats. The adaptive potential of arboviruses is driven by error-prone replication, which
creates a genetically diverse pool of competing virus genotypes within each host. This proposal examines how
mosquitoes and birds act in concert to shape WNV evolution and fitness. Our previous research has allowed
us to make very clear predictions about the outcome of each proposed aim and has facilitated our ability to
translate our previous work to new emerging pathogens such as Zika virus.
In birds, WNV fitness gains are limited by high MOI environments in susceptible vertebrates (e.g. crows) and
promoted in birds that limit replication (e.g. robins). Mosquitoes also have species-dependent impacts on WNV
diversification and fitness. Ironically, systemic infection of mosquitoes leads to reduced fitness in transmitted
WNV populations. Therefore, Aim 1 will attempt to either reduce or increase WNV fitness by forcing it into
transmission cycles with different host assemblages. We predict that crows and Cx. pipiens mosquitoes will
result in WNV populations that are dramatically reduced in fitness compared to WNV that is maintained by
robins and Cx. quinquefasciatus.
Our results strongly suggest that the limitations on fitness gains of WNV when it replicates in crows are related
to the high viremias that occur in this host relative to robins. At high MOI, coinfection of individual cells is
efficient and defective (or low fitness) genomes are complemented by those of high fitness. This suppresses
the overall fitness of the population. Aim 2 of the current proposal tests this hypothesis through in vivo and ex
vivo studies of WNV loads and diversity in avian PBMCs, a critical site of WNV replication. We predict that at
high MOI, clearly deleterious mutations (intrahost length-variants, for example) will persist and fitness will be
reduced.
The fitness declines that we observed in WNV during mosquito infection occur because of high virus mutation
rates coupled with stochastic reductions in the population (i.e. bottlenecks) as the virus moves from one
mosquito tissue to another. It is therefore critical to understand the mechanistic basis for the formation of these
“barriers” to arbovirus transmission. Our preliminary data suggests that one critical aspect that contributes to
them is RNAi-based targeting of the flavivirus sfRNA. In addition, we have preliminary data suggesting that
sfRNA1/2 facilitates virus escape from anatomical barriers. Therefore, in Aim 3 we will examine how mosquito
RNAi targets the WNV genome, and in particular the sfRNA1 start site, and how the virus population changes
as a result of being “trapped” within a transmission barrier. This aim also will leverage our extensive
experience working on WNV-host interactio...

## Key facts

- **NIH application ID:** 10098285
- **Project number:** 5R01AI067380-15
- **Recipient organization:** COLORADO STATE UNIVERSITY
- **Principal Investigator:** Gregory David Ebel
- **Activity code:** R01 (R01, R21, SBIR, etc.)
- **Funding institute:** NIH
- **Fiscal year:** 2021
- **Award amount:** $375,139
- **Award type:** 5
- **Project period:** 2007-05-15 → 2022-02-22

## Primary source

NIH RePORTER: https://reporter.nih.gov/project-details/10098285

## Citation

> US National Institutes of Health, RePORTER application 10098285, Quasispecies dynamics in arbovirus persistence emergence and fitness (5R01AI067380-15). Retrieved via AI Analytics 2026-05-23 from https://api.ai-analytics.org/grant/nih/10098285. Licensed CC0.

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