# Time-resolved FRET-based allostery sensors for any protein kinase drug target

> **NIH NIH R33** · UNIVERSITY OF MINNESOTA · 2021 · $377,096

## Abstract

ABSTRACT
The protein kinases are the top class of drug targets for the development of new cancer therapeutics. Existing
kinase inhibitors, which target the highly-conserved active sites of kinases, have major limitations including poor
selectivity and a high incidence of clinical resistance leading to treatment failure. New allosteric inhibitors, which
bind in other pockets outside the kinase active site and trigger structural changes that block kinase activity, are
far more selective and are highly effective at overriding clinical resistance to conventional kinase inhibitors.
However, allosteric kinase inhibitors have proven extremely challenging to identify with existing drug screening
technologies, and are only available for a small handful of kinases.
 A major reason for this failure of existing drug screening technologies is that they cannot detect the atomic-
scale structural changes that define the mode of action of allosteric kinase inhibitors. We have developed a
game-changing high-throughput screening technology, based on nanosecond time-resolved fluorescence, that
can identify allosteric inhibitors by tracking with atomic resolution the structural changes they trigger in the kinase
drug target. Applying this technology to the mitotic protein kinase Aurora A, we have shown that it can
simultaneously track inhibitor binding affinity and allosteric effects on the kinase, can classify inhibitors into
different allosteric subtypes, and is sufficiently accurate, rapid and scalable to handle high-throughput screening
projects. To maximize the impact of the technology on the drug discovery pipeline, several technical barriers
need to be surmounted to expand the scope of the technology beyond the current single drug target Aurora A.
 Our current technology is based on a chemical labeling procedure for incorporating fluorescent probes,
cysteine labeling, that is not readily applicable to many important kinase drug targets due to the presence of
cysteine residues important for structural integrity and catalytic function. In this proposal, we broaden the scope
of the technology to make it applicable to the majority of the ~500 human kinases by developing a series of new
tools for site-specific probe incorporation and by expanding the range and type of small molecules that can be
identified in screening. Finally, we benchmark the suitability of the technology for real-world drug discovery efforts
by performing a high-throughput screening project to identify novel allosteric inhibitors of at least one protein
kinase for which no allosteric inhibitors are currently available.
 The success of this project will bring an entirely-new allosteric drug discovery technology into being, with
unique capabilities that no existing technology can provide. Employment of this approach could jumpstart the
discovery of allosteric kinase inhibitors for a large number of important cancer drug targets, broadening the range
of therapeutic options for cancer patients and...

## Key facts

- **NIH application ID:** 10106608
- **Project number:** 5R33CA246363-02
- **Recipient organization:** UNIVERSITY OF MINNESOTA
- **Principal Investigator:** Nicholas Mark Levinson
- **Activity code:** R33 (R01, R21, SBIR, etc.)
- **Funding institute:** NIH
- **Fiscal year:** 2021
- **Award amount:** $377,096
- **Award type:** 5
- **Project period:** 2020-03-01 → 2023-02-28

## Primary source

NIH RePORTER: https://reporter.nih.gov/project-details/10106608

## Citation

> US National Institutes of Health, RePORTER application 10106608, Time-resolved FRET-based allostery sensors for any protein kinase drug target (5R33CA246363-02). Retrieved via AI Analytics 2026-05-24 from https://api.ai-analytics.org/grant/nih/10106608. Licensed CC0.

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