Understanding Mechanisms of Robust Information Processing by NF-kappaB

NIH RePORTER · NIH · R01 · $355,290 · view on reporter.nih.gov ↗

Abstract

Understanding Mechanisms of Robust Information Processing by NF-κB A major open question in biology is how do cells operate robustly despite ever-present biological noise? Inputs received by cells are unavoidably noisy due to variable translation and secretion of signaling factors, propagation in tissues and stochastic fluctuations in molecular concentrations. Yet, somehow cells are able to accurately process these noisy inputs and create appropriate responses regularly. This proposal aims to answer this fundamental question by studying the effect of noise on gene regulation by the well-known and medically important innate immune signaling pathway NF-B. Attempts at understanding dynamic gene regulation by NF-B and the molecular mechanisms that deal with noise have generally been hampered by significant cell-to-cell variability (requiring single cell analyses), and technical limitations in studying live cells under dynamical signals. Here, we will combine our experience in NF-B signaling, established microfluidic cell culture techniques and mathematical modeling to study this most interesting problem in single cells. Our lab is uniquely positioned to explore and answer this new field, as we have spent the last 10 years constructing and improving the experimental and mathematical methods to study the effect of noise in cellular decision making. Answering this question will have a profound impact on both our basic understanding of cellular decision-making processes, as well as implications in preventing and treating diseases like infection, autoimmunity and cancer.

Key facts

NIH application ID
10120701
Project number
5R01GM128042-04
Recipient
UNIVERSITY OF CHICAGO
Principal Investigator
Savas Tay
Activity code
R01
Funding institute
NIH
Fiscal year
2021
Award amount
$355,290
Award type
5
Project period
2018-05-01 → 2023-03-31