# Structural Biology of Regulatory RNPs

> **NIH NIH R35** · UNIVERSITY OF CALIFORNIA LOS ANGELES · 2021 · $625,997

## Abstract

Project Summary/Abstract
Most noncoding RNAs assemble with proteins to regulate diverse cellular processes including DNA replication,
RNA transcription, RNA processing, and translation. These RNA-protein complexes (RNP) are often dynamic
assemblies that include a core RNP plus other proteins that bind transiently or form complexes with different
functions. We will use an integrative structural biology approach combining NMR spectroscopy, X-ray
crystallography, and electron microscopy along with rigorous biochemistry and molecular biology to investigate
structure, assembly, dynamics, and function of two regulatory RNPs, telomerase and 7SK RNP. Telomerase
extends the 3'-ends of linear chromosomes by repetitively synthesizing the short telomere repeat sequence
(TTAGGG in humans) using an RNA template that is part of its integral telomerase RNA (TER) and its
specialized telomerase reverse transcriptase (TERT). It is a highly-regulated determinant of aging,
tumorigenesis, and stem cell renewal. Our laboratory has pioneered structural studies of telomerase, most
recently determining a 4.8Å cryo-electron microscopy structure of active Tetrahymena telomerase with DNA.
To elucidate the complete mechanism of telomere repeat synthesis and how telomerase is recruited to and
regulated at telomeres, we propose to obtain (1) atomic resolution structures of Tetrahymana telomerase at
each step in the catalytic cycle and correlate structure with activity and disease mutations in human telomerase
and (2) investigate the structure and function of telomeric DNA-associated proteins in telomerase and at
telomeres. These studies will provide fundamental insights into telomerase mechanism and regulation, how
TERT and TER mutations linked to disease affect activity, and a structural basis for designing drugs to target
telomerase activity. Human 7SK is an abundant nuclear long noncoding RNA that regulates RNA polymerase II
(RNAPII) transcription, primarily by assembling with proteins to form an RNP that sequesters and inactivates
the positive transcription elongation factor b (P-TEFb). P-TEFb is an integral component of the super
elongation complex that phosphorylates negative transcription elongation factors and the RNAPII CTD to
stimulate productive elongation of mRNA transcripts. 7SK also regulates the RNAPII transcription of small
nuclear RNAs, enhancer RNAs, and axon maintenance through its interaction with hnRNP R. To understand
the structural basis of 7SK regulation of P-TEFb activity, we propose to (1) determine the mechanism of
assembly and structure of the stress-resistant core 7SK RNP, comprising 7SK, methylphosphate capping
enzyme (MePCE), and La related protein group 7 (Larp7), and (2) determine how Hexim and P-TEFb interact
with 7SK core RNP and each other to form the “active” 7SK RNP. Diseases linked to P-TEFb misregulation
include cardiac hypertrophy, cancers, and primordial dwarfism, and P-TEFb is a host cofactor for HIV
replication. These studies will pro...

## Key facts

- **NIH application ID:** 10125835
- **Project number:** 5R35GM131901-03
- **Recipient organization:** UNIVERSITY OF CALIFORNIA LOS ANGELES
- **Principal Investigator:** JULI FEIGON
- **Activity code:** R35 (R01, R21, SBIR, etc.)
- **Funding institute:** NIH
- **Fiscal year:** 2021
- **Award amount:** $625,997
- **Award type:** 5
- **Project period:** 2019-04-01 → 2024-03-31

## Primary source

NIH RePORTER: https://reporter.nih.gov/project-details/10125835

## Citation

> US National Institutes of Health, RePORTER application 10125835, Structural Biology of Regulatory RNPs (5R35GM131901-03). Retrieved via AI Analytics 2026-05-23 from https://api.ai-analytics.org/grant/nih/10125835. Licensed CC0.

---

*[NIH grants dataset](/datasets/nih-grants) · CC0 1.0*
