# Structural Dynamics of Molecular Motors and the Ribosome

> **NIH NIH R35** · UNIVERSITY OF PENNSYLVANIA · 2021 · $920,561

## Abstract

Summary
Protein synthesis and active transport of vesicular cargoes are vital to development of all tissues and to the
targeted delivery of organelles, proteins, and signaling molecules in eukaryotes. Accordingly, defects in protein
expression and transport are linked to developmental, neurodegenerative, pigmentation, immunological, and
other diseases. Knowing the detailed mechano-chemistry and structural dynamics of the ribosome and motor
proteins is essential for understanding and interpreting their roles in the cell. We have developed a number of
powerful new biophysical tools that reveal the structural dynamics and reaction kinetics of the protein synthesis
elongation cycle and cargo transport in muscle and non-muscle molecular motors under applied mechanical
force. We will apply these unique tools to investigate the rhythm of protein synthesis and premature termination
in eukaryotes. We will elucidate the divergent biochemical and mechanical properties of skeletal muscle myosin
and non-muscle myosins-I, V, VI and X. Understanding functional dynamics and mechanistic detail that have not
yet previously been accessible is now feasible. This MIRA grant coalesced 3 former NIH grants: the applicant's
section of a program project on molecular motors in cells, an individual R01 grant to the applicant on basic
biophysical mechanisms of molecular motors, and a multi-PI grant on protein synthesis. The links between all of
these different topics are that they are subject to formidable study by single molecule biophysics approaches
and they incorporate P-loop NTPases with many common structural motifs and principles. They can be under-
stood synergistically by studying and comparing their individual structural, energetic and dynamic features. Ex-
amples of this synergy are given in the body of the application. For the renewal period we plan to 1) continue the
successful development of state-of-the-art single molecule fluorescence and optical trap technology, 2) apply
these methods to a series of myosin isoforms that have been described in the literature as having qualitatively
different properties, 3) build a new class of intracellular force-FRET sensors for studying mechanobiological
signaling from the peripheral environment of a cell to control of gene expression in the nucleus, 4) compare and
contrast mechanisms of eukaryotic protein synthesis with the bacterial system, 5) elucidate the detailed mecha-
nisms for enhancement, during protein synthesis, of premature termination codon (PTC) read-through by phar-
maceuticals that are candidates for therapy in PTC diseases (e.g. Duchenne muscular dystrophy and cystic
fibrosis,) and 5) a new venture to test processive translocation by AAA+ domain ring proteins, including Hsp104
(which disaggregates toxic amyloid proteins) and katanin (which modulates microtubule length by severing and
is also tied to diseases). Overall, these studies will lead to a much more general view of the mechanisms and
characteristics...

## Key facts

- **NIH application ID:** 10166635
- **Project number:** 2R35GM118139-06
- **Recipient organization:** UNIVERSITY OF PENNSYLVANIA
- **Principal Investigator:** YALE E GOLDMAN
- **Activity code:** R35 (R01, R21, SBIR, etc.)
- **Funding institute:** NIH
- **Fiscal year:** 2021
- **Award amount:** $920,561
- **Award type:** 2
- **Project period:** 2016-07-15 → 2026-05-31

## Primary source

NIH RePORTER: https://reporter.nih.gov/project-details/10166635

## Citation

> US National Institutes of Health, RePORTER application 10166635, Structural Dynamics of Molecular Motors and the Ribosome (2R35GM118139-06). Retrieved via AI Analytics 2026-05-23 from https://api.ai-analytics.org/grant/nih/10166635. Licensed CC0.

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