# Bruker RapifleX MALDI TOF/TOF Mass Spectrometer

> **NIH NIH S10** · UNIVERSITY OF PENNSYLVANIA · 2021 · $881,298

## Abstract

Project Summary/Abstract
This proposal requests funding for a Bruker rapifleX matrix-assisted laser desorption ionization (MALDI) time-of-
flight/time-of-flight (TOF/TOF) mass spectrometry (MS) instrument to be placed in the MS Facility in the
Department of Chemistry at the University of Pennsylvania (UPenn). The rapifleX will replace a 2008 Bruker
Ultraflex III MALDI TOF/TOF for high resolution and MS/MS analysis of biomacromolecules. This is an essential
capability for the user community of NIH-funded chemical biology researchers at UPenn synthesizing modified
peptides, proteins, and oligonucleotides. The rapifleX is not merely a replacement for the UltrafleX III, its improved
resolution and MS/MS capabilities will permit analysis of complex PTMs or cross-links that are challenging on
current MALDI and electrospray ionization systems at UPenn. Furthermore, the rapifleX provides new capabilities
not currently found in any MS system at UPenn, allowing users to conceive of new areas of research. Ultra-high
throughput screening (uHTS) analysis and MALDI MS imaging (MSI) will take biomedical research at UPenn in
new directions. The uHTS capabilities will enable experiments to characterize enzyme and small molecule
reactions, including monitoring the kinetics of post-translational modifications on authentic peptide and protein
substrates and machine-learning enhanced experiments exploring combinatorial effects of reagents and additives
in reactions (in collaboration with the High Throughput Experimentation Center and Merck developers of uHTS
experiments). Most significantly, the rapifleX will bring the exciting capability of MSI to UPenn. Among the
projects included in this application are those that use state-of-the-art imaging methods with the rapifleX to
address important research questions in areas such as cancer, viral and bacterial infections, Alzheimer’s and
Parkinson’s Disease, or diabetes and obesity. Also included is a project that pushes beyond the state-of-the-art
to develop new MSI technologies using the rapifleX that will vastly increase the information content from targeted
imaging. The addition of the rapifleX will have an immediate and lasting impact on more than 20 highly active
investigators and more than 200 trainees carrying out research that spans nine institutes of the NIH. This includes
chemical biology, biophysics, organic chemistry, neuroscience, and translational research programs, as well as
NIH T32-funded trainees. The rapifleX will also significantly benefit NIH-funded research programs in schools
across UPenn, including the Perelman School of Medicine, School of Engineering and Applied Science, and
School of Veterinary Medicine, as well as at neighboring institutions such as the Children’s Hospital of
Philadelphia, Drexel University, and Thomas Jefferson University. The rapifleX will be a key instrument in a broad
overhaul of the UPenn Chemistry MS Facility, making it a center of excellence for the region.

## Key facts

- **NIH application ID:** 10177330
- **Project number:** 1S10OD030460-01
- **Recipient organization:** UNIVERSITY OF PENNSYLVANIA
- **Principal Investigator:** Ernest James Petersson
- **Activity code:** S10 (R01, R21, SBIR, etc.)
- **Funding institute:** NIH
- **Fiscal year:** 2021
- **Award amount:** $881,298
- **Award type:** 1
- **Project period:** 2021-09-01 → 2023-08-31

## Primary source

NIH RePORTER: https://reporter.nih.gov/project-details/10177330

## Citation

> US National Institutes of Health, RePORTER application 10177330, Bruker RapifleX MALDI TOF/TOF Mass Spectrometer (1S10OD030460-01). Retrieved via AI Analytics 2026-05-24 from https://api.ai-analytics.org/grant/nih/10177330. Licensed CC0.

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