# Kinetoplastid RNA editing

> **NIH NIH R01** · STATE UNIVERSITY OF NEW YORK AT BUFFALO · 2021 · $350,408

## Abstract

RNA editing in kinetoplastid parasites entails massive remodeling of mitochondrial mRNAs by
posttranscriptional insertion and deletion of uridine (U) residues to generate mRNAs encoding proteins
involved in parasite bioenergetics. U insertion/deletion RNA editing is unique to kinetoplastids and essential for
T. brucei survival and virulence. The RNA editing holoenzyme comprises two subcomplexes: RECC (RNA
Editing Core Complex) and RESC (RNA Editing Substrate Binding Complex). Trans-acting guide RNAs
(gRNAs) direct U insertion/deletion, acting sequentially such that editing proceeds 3' to 5' along an mRNA.
RECC contains the editing enzymes, and the mechanisms by which RECC catalyzes U insertion/deletion at a
single editing site have been extensively studied. More recently, RESC has emerged as the scaffold for editing
and a coordinator of interactions between mRNAs, gRNAs, and RECC, although the mechanisms by which it
accomplishes these tasks are essentially unknown. Adding even more complexity, editing of specific mRNAs is
differentially regulated between human bloodstream form (BF) and insect vector procyclic form (PF) parasites.
The mechanism(s) of developmental regulation, and the precise point(s) in the life cycle at which they are
effected, remain entirely mysterious. The goals of this application are to (1) delineate the roles of distinct
components of RESC and a novel RESC-related complex in gRNA trafficking and utilization, and (2) to define
aspects of the editing process that serve as control points for stage specific regulation during the T. brucei life
cycle. To accomplish these goals, we developed an innovative and powerful bioinformatic tool (HTS/TREAT)
that permits us to now examine the mitochondrial transcriptome at single nucleotide resolution, and group
partially edited mRNA intermediates in ways that illuminate specific aspects of gRNA usage. Combining this
bioinformatic approach with RNA immunoprecipitation and protein-protein interaction studies, we will define the
mechanisms by which specific RESC proteins function, correlate these to RESC heterogeneity and dynamic
interactions, and elucidate the steps in the editing process that are developmentally controlled. We will also
take advantage of recent technology that permits generation of substantial numbers of insect metacyclic form
(MF) T. brucei, a largely unexplored intermediate between PF and BF. Using HTS/TREAT, we will define the
patterns of RNA editing in MFs, and reveal whether BF RNA editing patterns for some or all mRNAs emerge in
MFs, providing insight into the temporal control of RNA editing during T. brucei development. The proposed
studies address several important gaps in knowledge regarding the essential kinetoplastid RNA editing
process. Moreover, this work may help lay the foundation for future drug development and provide important
insights into ribonucleoprotein complex function in higher organisms.

## Key facts

- **NIH application ID:** 10200087
- **Project number:** 5R01GM129041-04
- **Recipient organization:** STATE UNIVERSITY OF NEW YORK AT BUFFALO
- **Principal Investigator:** Laurie K. Read
- **Activity code:** R01 (R01, R21, SBIR, etc.)
- **Funding institute:** NIH
- **Fiscal year:** 2021
- **Award amount:** $350,408
- **Award type:** 5
- **Project period:** 2018-07-13 → 2024-06-30

## Primary source

NIH RePORTER: https://reporter.nih.gov/project-details/10200087

## Citation

> US National Institutes of Health, RePORTER application 10200087, Kinetoplastid RNA editing (5R01GM129041-04). Retrieved via AI Analytics 2026-05-21 from https://api.ai-analytics.org/grant/nih/10200087. Licensed CC0.

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