# A Computational Framework for Distributed Registration of Massive Neuroscience Images

> **NIH NIH RF1** · KITWARE, INC. · 2021 · $1,365,152

## Abstract

Project Summary
Neuroscience stands at the precipice of a new depth of understanding about how the brain works thanks to recent
advances in imaging data acquisition technologies such as light-sheet ﬂuorescence microscopy (LSFM). How-
ever, the lack of analytic tooling to mine this rich information's relationship across samples, timepoints, and data
acquisition technologies prevents researchers from unlocking quantitative relationships. We propose the creation
of an easy-to-use, distributed-computation image registration tools that will map large images into a common
reference frame. This work will be based on the open source Insight Toolkit (ITK), a widely supported, standard
library for reproducible, computational image analysis. We propose extending ITK's registration architecture with
technologies and methods from deep learning and the scientiﬁc Python community to effectively register LSFM
volumes and time series. This project has the potential to integrate recent advances in cell typing and circuit
mapping that will ultimately elucidate the underlying mechanisms of brain development and function.

## Key facts

- **NIH application ID:** 10259930
- **Project number:** 1RF1MH126732-01
- **Recipient organization:** KITWARE, INC.
- **Principal Investigator:** Andinet Asmamaw Enquobahrie
- **Activity code:** RF1 (R01, R21, SBIR, etc.)
- **Funding institute:** NIH
- **Fiscal year:** 2021
- **Award amount:** $1,365,152
- **Award type:** 1
- **Project period:** 2021-07-15 → 2025-06-30

## Primary source

NIH RePORTER: https://reporter.nih.gov/project-details/10259930

## Citation

> US National Institutes of Health, RePORTER application 10259930, A Computational Framework for Distributed Registration of Massive Neuroscience Images (1RF1MH126732-01). Retrieved via AI Analytics 2026-05-24 from https://api.ai-analytics.org/grant/nih/10259930. Licensed CC0.

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