Using a chemical biology approach to develop novel inhibitors of mitochondrial oxidative phosphorylation for the treatment of ovarian cancer

NIH RePORTER · VA · I01 · · view on reporter.nih.gov ↗

Abstract

The number of women Veterans is rapidly increasing and expected to reach to 16-17% of the total Veteran population within the next two decades. Furthermore, female Veterans are an aging population, the 45-64 age group being the largest cohort. As female Veterans age, an increasing number are expected to present with cancers. Gynecologic tumors constitute 12% of all cancers in women Veterans with ovarian malignancy being the second most common in this group. Ovarian cancer predominantly develops in postmenopausal women. Therefore, the incidence of this cancer is expected to increase as the population ages. Ovarian cancer is an especially lethal cancer with none of the modern treatment regimens showing major benefits on overall survival of patients. Our proposed research focuses on the development of novel oxidative phosphorylation (OXPHOS) inhibitors for the treatment of ovarian cancer. Leads for therapeutics emerging from this work have great potential benefit to women Veterans and is highly significant to the VA Healthcare system. Recurrent tumors, cancer stem cells, and non-malignant cells from the tumor microenvironment engage OXPHOS for their metabolic needs. Therefore, there is renewed interest in developing OXPHOS inhibitors as novel agents for the treatment of cancer. We have identified a group of compounds that inhibit OXPHOS by interfering with ubiquinone in transporting electrons from NADH and FADH2 to molecular oxygen. The compounds we are testing, citral, plumbagin, curcumin, atovaquone and others, have an unsaturated carbonyl functional group that mimics ubiquinone’s benzoquinone substructure. As a result, these compounds interfere in OXPHOS, cause rapid increase in intracellular oxygen radicals that damage DNA, and induce apoptosis through the activation of p53. Such ubiquinone mimetics are therefore candidates for cancer therapy. However, the OXHPOS inhibitors we have examined so far, show poor potency and pharmacokinetic characteristics. In this application we propose to employ rapid and cost-effective computational approaches to identify novel and potent OXPHOS inhibitors with the goal of developing leads for treatment of high-grade serous ovarian tumors. In Aim 1, we will develop and validate a data mining pipeline to identify potent and drug-like OXPHOS inhibitors from extensive assay data available in PubChem public repository. In Aim 2 we will employ a machine learning model, based on previous screening data, to guide selection of new compounds for iterative screening in cell biological assays reporting on different aspects of the OXPHOS pathway. In Aim 3, we will test combination dosing of OXPHOS and PARP inhibitors for synergistic potency and efficacy in ovarian cancer models. The methods developed here could be applied generally in leveraging prior assay data to build models that guide iterative screening as a more efficient approach than standard high throughput screening. The proposed studies should help us to identify t...

Key facts

NIH application ID
10260915
Project number
1I01BX005627-01
Recipient
WM S. MIDDLETON MEMORIAL VETERANS HOSP
Principal Investigator
Manish S Patankar
Activity code
I01
Funding institute
VA
Fiscal year
2022
Award amount
Award type
1
Project period
2022-04-01 → 2026-03-31