# Combined Mechanistic and Input-Output Modeling of the Hippocampus During Spatial Navigation > **NIH NIH RF1** · UNIVERSITY OF SOUTHERN CALIFORNIA · 2021 · $1,198,121 ## Abstract PROJECT ABSTRACT Large-scale realistic model of neuronal network is a powerful tool for studying neural dynamics and cognitive functions. It integrates multi-scale neurobiological mechanisms/processes identified through diverse hypotheses and experimental data into a single platform. However, due to its high complexity and lack of neuron-to-neuron correspondence to experimental data, it is difficult to constrain, validate and optimize such a model using large- scale neural activities recorded from behaving animals, which are most relevant to cognitive processes. We propose to develop a novel modeling paradigm inspired by the generative adversarial network (GAN) to synergistically combine both mechanistic and input-output (machine learning) modeling techniques to build large- scale realistic models that are functionally indistinguishable from actual neuronal networks. We will apply this paradigm to the modeling of the hippocampus to reveal how spatial information is encoded and re-encoded in the hippocampal neuronal networks during navigation. Specifically, full-scale mechanistic model of the hippocampus will be constructed as the generative model to simulate how hippocampal circuits generate ensemble spiking activities in response to 2D trajectories during navigation. Large-scale population-level input- output models will be developed to statistically characterize input-output properties of the real hippocampus and the hippocampal mechanistic model. The input-output models of the mechanistic model will be evaluated by a discriminator against the ground truth input-output models of the real hippocampus. This forms the discriminative model that (1) identifies discrepancies between the mechanistic model and the real hippocampus, and (2) guides the optimization/modification of neuron model and connectivity parameters of the generative model. This procedure will be performed iteratively until the discriminator fails to distinguish the generative (mechanistic) model from the real hippocampus. In addition, the modifications to the mechanistic model generated by this paradigm will provide falsifiable predictions that can be further tested experimentally. We expect to use this combined mechanistic and input-output modeling strategy to unveil how (1) causal relations between spiking activities across different hippocampal subregions, and (2) place fields of hippocampal neurons, are determined by multi-scale neurobiological mechanisms and the interplay between these mechanisms. The proposed methodology will provide a general computational framework for integrating biological knowledge, hypotheses, and large-scale input-output data to gain deeper and more quantitative understanding of cognitive functions. ## Key facts - **NIH application ID:** 10263699 - **Project number:** 1RF1DA055665-01 - **Recipient organization:** UNIVERSITY OF SOUTHERN CALIFORNIA - **Principal Investigator:** Dong Song - **Activity code:** RF1 (R01, R21, SBIR, etc.) - **Funding institute:** NIH - **Fiscal year:** 2021 - **Award amount:** $1,198,121 - **Award type:** 1 - **Project period:** 2021-09-01 → 2025-08-31 ## Primary source NIH RePORTER: https://reporter.nih.gov/project-details/10263699 ## Citation > US National Institutes of Health, RePORTER application 10263699, Combined Mechanistic and Input-Output Modeling of the Hippocampus During Spatial Navigation (1RF1DA055665-01). Retrieved via AI Analytics 2026-05-25 from https://api.ai-analytics.org/grant/nih/10263699. Licensed CC0. --- *[NIH grants dataset](/datasets/nih-grants) · CC0 1.0*