Combined Methylation and Mutation to Predict Response to PARP Inhibitors

NIH RePORTER · NIH · R01 · $596,715 · view on reporter.nih.gov ↗

Abstract

PROJECT SUMMARY/ABSTRACT The overall goal of the current proposal is to develop a clinically useful predictor of PARP inhibitor (PARPi) sensitivity/resistance to spare toxicities and cost for patients unlikely to derive benefit. Our hypothesis is that a combined mutation and methylation analysis performed immediately before initiation of therapy will provide a useful predictor of PARPi response. To test this hypothesis, our approach is to complete development of a high throughput and quantitative methylation assay for key HR genes and refine our assays using banked tumor tissues formalin fixed paraffin embedded (FFPE) neoplastic samples from phase II PARPi trials, then test these assays using samples from 4 large phase III randomized controlled trials (RCT) in OC and BC that employ three different PARPi. We propose three specific aims: Aim 1: Develop a clinical grade, quantitative methylation assay and a combined methylation and mutation assay (MMA) to define those BRCA wildtype cancers with best response to PARP inhibitors. Aim 2: Validate the combined HRR mutation and methylation assay (MMA) as a predictor of PARPi response in 2 randomized controlled trials of recurrent breast and ovarian cancer. Aim 3: Validate MMA as a predictor of PARPi response in 2 randomized controlled trials for primary treatment of advanced ovarian cancer. Together, these studies will provide insight into mechanisms of PARPi sensitivity while developing a clinical predictor for both breast and ovarian cancer, which could apply to other cancer types. These studies will lead to more precise therapeutic application of PARP inhibitors, reducing toxicity and cost while maximizing patient benefit.

Key facts

NIH application ID
10378133
Project number
5R01CA237600-03
Recipient
UNIVERSITY OF WASHINGTON
Principal Investigator
ELIZABETH MARY SWISHER
Activity code
R01
Funding institute
NIH
Fiscal year
2022
Award amount
$596,715
Award type
5
Project period
2020-04-01 → 2025-03-31