Harnessing simulations to uncover molecular mechanisms of mechanosensing

NIH RePORTER · NIH · R35 · $77,306 · view on reporter.nih.gov ↗

Abstract

Project Summary In order to perform some of their most important functions, cells must be able to generate, sense, and respond to mechanical forces. Many “mechanosensing” proteins have been discovered that are believed to change their behavior in a predictable and repeatable way when under mechanical tension. Yet, in most of these cases, we don’t know the molecular basis of how this force shifts the conformations adopted by the protein, or how this then leads to a concomitant change function. The molecular basis of mechanosensing can in principle be predicted using molecular simulation techniques, however this approach has either not been employed or not been successful because of the small magnitude of forces involved and the large size and complexity of the mechanosensors. In this work, we will develop a set of new simulation methodologies to properly sample protein conformations and protein-ligand biding lifetimes at a range of small forces. We will employ these techniques to study mechanosensing in three different contexts where we believe three distinct mechanisms for changing behavior in response to force are employed. Overall, the work in these studies will lead to a much greater understanding of the molecular paradigms used by cells to regulate their behavior in response to mechanical stimuli, and expand our simulation toolbox to be able to properly sample and assess their response to physiologically small forces.

Key facts

NIH application ID
10467269
Project number
3R35GM138312-02S1
Recipient
NEW YORK UNIVERSITY
Principal Investigator
Glen Hocky
Activity code
R35
Funding institute
NIH
Fiscal year
2021
Award amount
$77,306
Award type
3
Project period
2020-09-01 → 2025-06-30