# TR&D Project 2: Tissue and cellular elemental distribution, and image correlation

> **NIH NIH P41** · MICHIGAN STATE UNIVERSITY · 2022 · $230,469

## Abstract

PROJECT SUMMARY - TR&D PROJECT 2
Tissue and Cellular Elemental Distribution, and Image Correlation
This Technology Research and Development Project will develop Scanning X-Ray Fluorescence Microscopy
(SFXM) for quantitative views of trace element distributions in cells and tissues. It will use cryogenic specimen
preparation and imaging conditions as a gold standard for chemical and structural preservation as well as
radiation damage resistance. We will develop a cryo SXFM capability with a hundredfold increase in accessible
specimen area for beamline 8-BM of the Advanced Photon Source (APS) at Argonne National Laboratory, and
provide support for its operation. This will double the accessible experimental time in cryo SXFM at the APS,
divided between our BTRR and other biomedical researchers via no-cost, peer-reviewed General User
Proposals to the APS.
We will also introduce cryo specimen cross-compatibility with the nanoscale SFXM capabilities of the NIH-
purchased Bionanoprobe at the APS, laser-ablation inductively coupled plasma mass spectrometry (LA-ICP-
MS; TR&D 1) at Northwestern, photoacoustic microscopy (PAM; TR&D 2) at Northwestern, and correlative
cryogenic confocal light microscope (C3LM) at the APS.
We will develop and make available PyElements, a software platform to provide an integrated and cross-
registered view of quantitative images from all of these modalities. We will incorporate into PyElements a
numerical optimization approach to correcting for self-absorption of x-ray fluorescence in thicker specimens, so
that one can obtain quantitative information even from thicker specimens in 3D. All of these developments will
take place in the context of our Driving Biomedical Projects, with large-area cryo SXFM being of particular
importance to Theme A (Metal homeostasis or dysregulation in brain function), Theme C (Metal fluxes controlling
reproduction and development), and Theme D (Metal imbalances in metabolic pathology).

## Key facts

- **NIH application ID:** 10494059
- **Project number:** 5P41GM135018-03
- **Recipient organization:** MICHIGAN STATE UNIVERSITY
- **Principal Investigator:** Chris Johnson Jacobsen
- **Activity code:** P41 (R01, R21, SBIR, etc.)
- **Funding institute:** NIH
- **Fiscal year:** 2022
- **Award amount:** $230,469
- **Award type:** 5
- **Project period:** 2020-07-01 → 2025-05-31

## Primary source

NIH RePORTER: https://reporter.nih.gov/project-details/10494059

## Citation

> US National Institutes of Health, RePORTER application 10494059, TR&D Project 2: Tissue and cellular elemental distribution, and image correlation (5P41GM135018-03). Retrieved via AI Analytics 2026-05-23 from https://api.ai-analytics.org/grant/nih/10494059. Licensed CC0.

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