# Molecular Mechanisms for Carbohydrate Presentation to CD4+ T cells by MHCII Pathway

> **NIH NIH R01** · EMORY UNIVERSITY · 2022 · $465,058

## Abstract

Project Summary/Abstract
Most pathogenic bacteria express surface carbohydrates called capsular polysaccharides (CPSs). CPSs are
important vaccine candidates given that they are located on the outermost surface of bacteria and have distinct
structures. These two features make them easily accessible and distinctly recognizable by immune
surveillance, therefore resulting in the production of CPS-specific antibodies by B cells. To induce a CPS-
specific adaptive immune response (i.e., T cell-mediated B cell response), CPSs are conjugated with carrier
proteins, and the conjugation products are called glycoconjugate vaccines. Due to insufficient understanding of
their immune activation mechanisms, current glycoconjugate vaccine strategies have reached saturation and
are largely modifications of past empirical conjugation methods. The production of the current generation of
glycoconjugate vaccines is based on trial and error and does not make use of specific scientific knowledge to
maximize stimulation of critical immune cells (i.e., helper T cells) involved in producing protective IgG
antibodies. A new perspective on carbohydrate-based vaccine research is much needed. With the potential of
establishing a new paradigm, our previous discovery and preliminary data demonstrate that the mammalian
CD4+ T cell repertoire contains a population of T cells that recognize carbohydrate epitopes of glycoconjugate
vaccines, called Tcarbs. Building on our previous mechanistic work, we propose establishing a platform to
design and develop structurally defined glycoconjugate vaccines optimized for their immunogenic and
antigenic components to elicit protective immunity consistently and effectively. This proposal also addresses
another key parameter controlling the immunogenicity of conjugate vaccines, which is to identify the immune
correlates of protection induced by glycoconjugate vaccine immunization. In clinical practice, improving on
measuring CPS-specific antibody titers and the in vitro opsonophagocytic activity as immune correlates of
protection is an essential milestone to achieve for the reliable prediction of clinical efficacy. We propose to
identify key helper T cell populations that are essential for vaccine efficacy as a new immune correlate of
protection. Exploiting CPSs from two highly pathogenic Streptococcus pneumoniae (Spn) serotypes—Spn3
and Spn14—and building on our published and unpublished preliminary studies, we will establish a new and
broadly applicable conjugate vaccine platform and characterize immune responses that result from these
vaccines through two specific aims. Aim 1: Establish a knowledge-based conjugate vaccine platform
composed of endolysosome-cleavable polypeptide chains chemoenzymatically conjugated with CPSs. Aim 2:
Isolate and functionally characterize human Tcarb clones for their ability to induce protective humoral immunity

## Key facts

- **NIH application ID:** 10587072
- **Project number:** 2R01AI123383-06
- **Recipient organization:** EMORY UNIVERSITY
- **Principal Investigator:** Fikri Y Avci
- **Activity code:** R01 (R01, R21, SBIR, etc.)
- **Funding institute:** NIH
- **Fiscal year:** 2022
- **Award amount:** $465,058
- **Award type:** 2
- **Project period:** 2016-06-06 → 2027-07-31

## Primary source

NIH RePORTER: https://reporter.nih.gov/project-details/10587072

## Citation

> US National Institutes of Health, RePORTER application 10587072, Molecular Mechanisms for Carbohydrate Presentation to CD4+ T cells by MHCII Pathway (2R01AI123383-06). Retrieved via AI Analytics 2026-05-24 from https://api.ai-analytics.org/grant/nih/10587072. Licensed CC0.

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