BCCMA: Predicting TBI Pathology with Visual and Blood-based Biomarkers

NIH RePORTER · VA · I01 · · view on reporter.nih.gov ↗

Abstract

The purpose of this collaborative project is to identify robust biomarkers that predict chronic neuronal dysfunction following traumatic brain injury (TBI). Evaluating TBI-induced pathology and dysfunction in the brain can be challenging. We hypothesize that the retina can serve as a surrogate to monitor the rate of neurodegeneration occurring in the brain following injury. Furthermore, we hypothesize that blood-based biomarkers correlate with TBI-mediated neurodegeneration in the retina and brain. The first phase of this project is the discovery phase with the objective of identifying biomarkers that are predictive of chronic neuronal damage. Three distinct proposals will examine both blast-mediated and impact TBI using overlapping assessments of retinal function and structure. Each proposal will also utilize unique outcomes including proteomic analysis of the blood and serum, cognitive function, brain imaging modalities, and histology in both animal models and Veterans. A fourth project will use data from the first three projects to apply tissue modeling and informatic approaches to fully characterize TBI injury in the retina and brain. The second phase will validate the candidate biomarkers identified by each site by testing animals/tissue, and human biofluid samples in the other laboratories. This phase will determine the robustness of each biomarker across studies. In the third phase, we will test the most promising biomarkers in mice exposed to live blast explosions, providing translational value to the biomarkers. Project 4 (this project) will manage big data and analytics (statistics, computational modeling, and machine learning/AI) for the Linked Merit. The rich TBI measures produced by Project 1-3 will create a specific type data management challenge: big data variety1. We will manage this data variety across projects using data science and advanced analytics to assess multiple injury severities and types in a unified pipeline. By pooling and aligning diverse data at a granular level, it becomes possible to make TBI biomarker data Findable, Accessible, Interoperable and Reusable (FAIR)2, making complex data manageable, improving biomarker discovery, enhancing quality control (QC) and reproducibility, and enabling advanced analytics to drive translational therapeutic development. The present Linked Merit leverages our prior efforts to build infrastructure enabling FAIR data sharing, data citation and query, and multidimensional analytics; repurposing them to promote biomarker discovery, assess reproducibility, and cross-validate findings. We will establish a TBI Open Data Commons pipeline for biomarkers (Aim 1). We will ingest and cross-curate animal data from Project 1 [Harper], Project 2 [Feola], Project 3 [Wang] and Co-I Thao (Vicky) Nguyen will use sensor data from these studies to develop biofidelic computational models of blunt TBI, shock-tube blast, and open field blast experiments to determine and compare the stresses and deform...

Key facts

NIH application ID
10702037
Project number
1I01BX005871-01A2
Recipient
VETERANS AFFAIRS MED CTR SAN FRANCISCO
Principal Investigator
ADAM R FERGUSON
Activity code
I01
Funding institute
VA
Fiscal year
2024
Award amount
Award type
1
Project period
2023-10-01 → 2027-09-30