# Targeting microRNAs in the tumor microenvironment with pHLIP conjugated next generation chemically modified PNAs

> **NIH NIH R01** · BETH ISRAEL DEACONESS MEDICAL CENTER · 2024 · $365,085

## Abstract

Diffuse large B-cell lymphoma (DLBCL) is a common cancer in the US, causing tens of thousands of deaths
each year and its incidence is on the rise. MicroRNAs (miRNAs) are small non-coding RNAs that are often mis-
regulated in lymphoma and leukemia. In particular, miR-155 is up-regulated in multiple lymphoma/leukemia sub-
types (notably DLBCL). Plus, direct evidence exists to show that its over-expression causes DLBCL in human
DLBCL xenografts and transgenic mouse models. Interestingly, the tumors induced by over-expression of miR-
155 depend on the continued expression of the miRNA for survival, since if the miRNA is withdrawn, the tumors
rapidly regress via apoptosis. This property of “oncogene addiction” makes this class of miRNAs ideal targets
for future anti-cancer therapy and promoted the initiation of a clinical trial to inhibit oncomiR-155 via intratumoral
delivery of Cobomarsen in Cutaneous T-cell Lymphoma (CTCL) and DLBCL. While remarkable progress has
been made in the past few years with FDA approvals of antisense and RNAi drugs, therapeutic miRNA targeting
still lags behind, largely due to issues related to selective delivery and toxicity.
 Here we propose to exploit the striking nature of oncogene addiction to develop potential therapeutics tailored
to antagonize this crucial oncomiR in a safe and effective manner. We previously published an approach to
target anti-miR-155 peptide nucleic acids (PNAs) to the acidic tumor microenvironment using pHLIP (pH Low
Insertion Peptide), with significant effects in a mouse model of lymphoma. pHLIP is a 36-amino acid peptide that
adopts an α-helical conformational change at low pH (< pH 6.5) that facilitates insertion of its C-terminus across
lipid bilayers in the acidic tumor microenvironment. Here we propose a multi-disciplinary project focused on
translating next-generation PNA and pHLIP technology to allow highly-specific targeting and improved efficacy
targeting oncogenic miR-155 in acidic tissues in miR-155-addicted cancers, with a favorable therapeutic window.
 Unlike most nucleic acids, PNAs are a synthetic DNA mimics in which the phosphodiester backbone is
substituted with a neutral N-(2-aminoethyl) glycine backbone. PNAs can bind single-strand targets with high
specificity and affinity and are not susceptible to proteases or nucleases, making PNAs ideal molecules for
targeting miRNAs. To further improve the effectiveness of antimiR PNAs, we will exploit a new class of PNA
analogs, designated gamma PNAs (gPNAs) that are conformationally pre-organized and so have advantageous
binding as well as solubility properties that should increase their effectiveness as antimiR agents. As proof of
principle for our stable next generation pHLIP-conjugated, chemically modified gamma PNAs (gPNAs) as cancer
therapeutics, we propose to test delivery and efficacy in lymphoma cancer models in this project (cell lines,
xenografts, PDX and GEMMs), with the ultimate goal of preparing a drug suitable for clini...

## Key facts

- **NIH application ID:** 10768641
- **Project number:** 5R01CA241194-05
- **Recipient organization:** BETH ISRAEL DEACONESS MEDICAL CENTER
- **Principal Investigator:** FRANK J. SLACK
- **Activity code:** R01 (R01, R21, SBIR, etc.)
- **Funding institute:** NIH
- **Fiscal year:** 2024
- **Award amount:** $365,085
- **Award type:** 5
- **Project period:** 2020-02-15 → 2025-01-31

## Primary source

NIH RePORTER: https://reporter.nih.gov/project-details/10768641

## Citation

> US National Institutes of Health, RePORTER application 10768641, Targeting microRNAs in the tumor microenvironment with pHLIP conjugated next generation chemically modified PNAs (5R01CA241194-05). Retrieved via AI Analytics 2026-05-22 from https://api.ai-analytics.org/grant/nih/10768641. Licensed CC0.

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