EBV Genomics and Bioinformatics

NIH RePORTER · NIH · P01 · $200,214 · view on reporter.nih.gov ↗

Abstract

CORE D – PROJECT SUMMARY The goal of the EBV Genomics and Bioinformatics Core D will be to provide unified, EBV-centric functional genomic methodologies and integrative bioinformatics support to all research Projects within the Program. Core D proposes two Specific Aims: 1) develop and implement functional genomic approaches to study viral and host genomes and epigenomes using diverse Next Generation Sequencing (NGS) approaches; and 2) provide bioinformatic support for each Project through a centralize hub responsible for data management, quality control, analysis, and transfer within the program. The scope of service will include: 1) providing expertise and capabilities in genomic approaches including mRNA expression by RNA-seq, CHIP- and ATAC-seq library preparations, DNA methylation studies by RBBS, and HiC ; 2) ensuring seamless coordination of ‘omics’ efforts across projects as they develop new insights about EBV and performing integrative analyses to combine data from different experiments across the various projects; and 3) assisting with final reports, abstracts, manuscripts, and future funding proposals. Core D’s broad, long-term objective is: to provide leading-edge functional genomics and comprehensive bioinformatics and data management support for the Program members, and proper deposit in public database repositories.

Key facts

NIH application ID
10840335
Project number
5P01CA269043-02
Recipient
WISTAR INSTITUTE
Principal Investigator
Italo Tempera
Activity code
P01
Funding institute
NIH
Fiscal year
2024
Award amount
$200,214
Award type
5
Project period
2023-05-11 → 2028-04-30