# Enhancing the Effectiveness of Immunotherapies by T Cell Epigenetic Reprogramming

> **NIH NIH R01** · OHIO STATE UNIVERSITY · 2024 · $640,056

## Abstract

PROJECT SUMMARY
Cancer and chronic virus infections are significant causes of morbidity and mortality. While cytotoxic CD8 T
cells are the main killers of tumors or virus-infected cells, persistent stimulation of CD8 T cells during chronic
infections or cancer results in a gradual loss of their cytotoxic function as T cells progress towards a fully-
exhausted state. While immune checkpoint blockade (ICB) therapy allows partially-exhausted CD8 T cells to
functionally recover by blocking inhibitory signals, terminally-exhausted T cells remain nonresponsive to this
therapy. The inability of terminally-exhausted T cells to recover after ICB may explain why many cancer patients
fail to mount durable responses to ICB. We recently showed that de novo DNA methylation programming is
causally linked to the progression of T cells toward terminal exhaustion and poor response to ICB. Importantly,
we discovered that targeting T cell-intrinsic epigenetic programs synergized the efficacy of ICB during chronic
infection or cancer. Yet, the following questions represent major gaps in our current understanding of T cell
exhaustion: (1) How are these epigenetic changes acquired in exhausted T cells? (2) What are the upstream
signals that regulate the specificity of de novo DNA methylation programs in exhausted versus functional T cells?
(3) Can we reverse the epigenetic programming in exhausted T cells to the functional state while avoiding
transformation? Bridging these gaps will allow us to identify and target factors that apply “epigenetic brakes” to
CD8 T cell function. To address these questions, we have developed a novel in-vitro model of stable human T
cell dysfunction as a tractable tool that can guide our in-vivo experiments by providing first-line mechanistic
studies. First, we will employ cutting-edge approaches, such as CRISPR-Cas9 gene editing and retroviral
transduction, to test the hypothesis that specific tumor microenvironmental signals regulate epigenetic
programming in persistently stimulated CD8 T cells, which promotes their resistance to ICB therapy. We aim to
block and/or revert the progression toward the terminally-exhausted state by targeting components of this
signaling pathway while promoting counteracting pathways. Second, we aim to rebalance specific
microenvironmental signals to restore functionality and response in terminally-exhausted T cells. Using novel in-
vitro model systems of T cell dysfunction and complementary in-vivo models of chronic viral infection and cancer,
as well as cutting-edge technologies to profile DNA methylation, open chromatin landscape, and transcriptome
in CD8 T cells, our proposed studies can determine if targeting specific factors can remodel chromatin back into
an accessible state at effector and/or stemness-associated genes, leading to functionally-rejuvenated T cells.
These proposed studies will provide insights into how epigenetic programming can be reversed during
progression to T cell exhaustion that ca...

## Key facts

- **NIH application ID:** 10857341
- **Project number:** 5R01AI170926-02
- **Recipient organization:** OHIO STATE UNIVERSITY
- **Principal Investigator:** Hazem E. Ghoneim
- **Activity code:** R01 (R01, R21, SBIR, etc.)
- **Funding institute:** NIH
- **Fiscal year:** 2024
- **Award amount:** $640,056
- **Award type:** 5
- **Project period:** 2023-06-05 → 2028-05-31

## Primary source

NIH RePORTER: https://reporter.nih.gov/project-details/10857341

## Citation

> US National Institutes of Health, RePORTER application 10857341, Enhancing the Effectiveness of Immunotherapies by T Cell Epigenetic Reprogramming (5R01AI170926-02). Retrieved via AI Analytics 2026-05-26 from https://api.ai-analytics.org/grant/nih/10857341. Licensed CC0.

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