Boosting protein synthesis using antisense oligonucleotides to treat neurodegeneration

NIH RePORTER · NIH · F30 · $34,623 · view on reporter.nih.gov ↗

Abstract

PROJECT SUMMARY Brain aging and disease occur alongside the loss of essential proteins and protein functions. For example, thousands of inherited conditions are due to genetic haploinsufficiency, in which partial or complete loss of one normal allele is sufficient to cause disease. Likewise, advanced age involves the loss of protective signaling, such as through neurotrophic factors, that could prevent degenerative processes. In either case, strategies that restore these single gene targets may be therapeutic. Current protein upregulation strategies, such as direct protein delivery or viral gene therapies, are limited in the central nervous system as they lack regulatable dosing, may distribute poorly, and can elicit neuroimmune reactions. The goal of this proposal is to investigate mRNA regulation as an alternative approach to safely upregulate protein expression. Protein synthesis relies on mRNA stability and translation efficiency, which are both determined by regulatory sequences in the untranslated regions (UTRs) of mRNA. The 3’UTR encodes numerous regulatory elements that engage RNA-binding proteins and regulatory RNAs to control mRNA translation and stability. I predict that blocking repressors from engaging a 3’UTR could stimulate protein synthesis of a select gene of interest. Antisense oligonucleotides (ASOs) are short, single-stranded DNA sequences that bind complementarily to RNA with high affinity and once bound, can sterically block trans-acting elements from engaging the transcript. ASOs are a clinically proven technology that have entered clinical trials for many neurodegenerative conditions, but there are currently no ASOs in clinical trials that target 3’UTRs for gene-specific upregulation. Therefore, I hypothesize that ASOs that mask repressive regulatory sequences on a 3’UTR can be used to stimulate synthesis of proteins that prevent or protect against neurodegeneration or age-related diseases. I demonstrated the feasibility of this approach by increasing expression of TANK-binding kinase 1 (TBK1), a protein haploinsufficient in amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD) caused by dominant TBK1 mutations. In Aim 1, I will test if our existing TBK1-upregulating ASOs can increase TBK1 expression and prevent neurodegenerative phenotypes in pre- clinical models of TBK1 haploinsufficiency. In Aim 2, I will evaluate if particular 3’UTR cis-elements may be universal targets for this ASO masking strategy. Aim 1 will establish the therapeutic relevance of 3’UTR-targeting ASOs and support advancement of TBK1-upregulating ASOs to human clinical testing. Aim 2 will greatly extend this approach to other gene targets, including neuroprotective protein factors. Completion of this proposal will establish 3’UTR-targeted ASOs as a generalizable strategy to stimulate protein expression to treat neurodegeneration and other age-related diseases. This training environment combines expertise in mRNA gene repression mechani...

Key facts

NIH application ID
10900172
Project number
1F30AG082394-01A1
Recipient
WASHINGTON UNIVERSITY
Principal Investigator
Ben David Boros
Activity code
F30
Funding institute
NIH
Fiscal year
2024
Award amount
$34,623
Award type
1
Project period
2024-06-01 → 2026-11-30