# Understanding eukaryotic proteasome assembly regulation

> **NIH NIH K99** · UNIVERSITY OF CALIFORNIA LOS ANGELES · 2024 · $100,620

## Abstract

PROJECT SUMMARY
Proteostasis of thousands of proteins is critical for cell viability, regulated in part by the cell proteasome. This is
a large multi-subunit machine that degrades short-lived or abnormal proteins. Proteasome function is critical in
many diseases, e.g. abnormally high in Alzheimer’s Disease or low in some cancers. In eukaryotes, the transla-
tion of subunits is initiated by transcription factor Rpn4, the subunits then assemble into the Core Particle (CP)
with chaperones, and finally the CP binds to the Regulatory Particle (RP), which identifies targets for degradation.
The long-term goal in this application is to help understand the mechanism that regulate proteasome assembly
in eukaryotic systems using both mathematical modeling and experimental analyses. The overall objectives in
this application are to uncover the mechanisms that regulate (1) eukaryotic proteasome subunit gene expression,
(2) assembly dynamics of the CP with chaperones and the RP and (3) post-translational modifications of the
proteasome. The central hypothesis is that eukaryotic cells have evolved a set of mechanisms that dynamically
regulate proteasome concentration and function. The rationale for this project is that the determination of the
mechanisms that regulate proteasome dynamics is likely to offer a strong framework whereby new strategies for
human disease and conditions can be developed. The central hypothesis will be tested by pursuing three specific
aims: (1) determine the impact of cell signaling on proteasome pre-assembly regulation, (2) evaluate eukaryotic
proteasome assembly, and (3) examine the influence of post-assembly proteasome phosphorylation. Under the
first aim, a dynamical systems model will be used to determine how Rpn4 feedback regulates proteasome sub-
unit gene expression. For the second aim, an experimental approaching using yeast as a model organism will
be used to investigate assembly efficiency of CP and chaperone binding. Additionally, a theoretical model of
eukaryotic proteasome assembly will also be used. In the third aim, phosphorylation rates of subunits will be
experimentally tested and a generalize Monod-Wyman-Changeux mathematical model of multisite phosphory-
lation will be used to analyze the conformational changes the CP attains. The research proposed in this
application is innovative, in the applicant’s opinion, because it focuses on eukaryotic proteasome assembly,
which has not been sufficiently characterized to date and incorporates both mathematical modeling and experi-
mental methods. The proposed research is significant because it is expected to provide strong scientific
justification for the continued development and future clinical applications of novel proteasome assembly inhibi-
tors. Ultimately, such knowledge has the potential of offering new opportunities for the development of innovative
therapies to treat diseases such as Alzheimer’s and cancers. Moreover, this fellowship is sponsored by Drs. Eric
J. D...

## Key facts

- **NIH application ID:** 11033367
- **Project number:** 1K99GM157504-01
- **Recipient organization:** UNIVERSITY OF CALIFORNIA LOS ANGELES
- **Principal Investigator:** Leonila Lagunes
- **Activity code:** K99 (R01, R21, SBIR, etc.)
- **Funding institute:** NIH
- **Fiscal year:** 2024
- **Award amount:** $100,620
- **Award type:** 1
- **Project period:** 2024-09-10 → 2026-08-31

## Primary source

NIH RePORTER: https://reporter.nih.gov/project-details/11033367

## Citation

> US National Institutes of Health, RePORTER application 11033367, Understanding eukaryotic proteasome assembly regulation (1K99GM157504-01). Retrieved via AI Analytics 2026-05-21 from https://api.ai-analytics.org/grant/nih/11033367. Licensed CC0.

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