Development of a cancer driver mutation screening panel to predict carcinogenesis using error corrected duplex sequencing technology

NIH RePORTER · NIH · N01 · $544,131 · view on reporter.nih.gov ↗

Abstract

The main premise for the current project is that cancer is a chronic disease and the earliest molecular diagnostic time point in a rodent model for any reliable indicator of carcinogenicity may be in the order of 3-6 months (the time likely needed for mutations to occur and drive clonal expansion that may or may not be detectable histologically). Examination of cancer driver genes, mutation signatures, and other transcripts at these subchronic timepoints will likely probe the preneoplastic or carcinogenic processes that have the greater predictive potential for a carcinogenic hazard. The hypothesis is that there will be additional clonally expanded pathogenic mutations and cancer driver genes in the treated animals compared to the age-matched controls in the study. And the abundance and size of those clones will be greatest in the most cancer-prone tissues and/or in samples collected at later time points. This study will also establish a database on mutation endpoints that accumulate naturally due to normal aging and this information can be used as a reference in future studies. Examination of the cancer driver genes, mutation signatures, and transcriptomic alterations from subchronic (~3-6 months) animal studies or long-term (~3 months) in vitro exposures for predicting carcinogenicity is a novel approach.

Key facts

NIH application ID
11219541
Project number
273201700005C-P00022-9999-22
Recipient
BATTELLE MEMORIAL INSTITU
Principal Investigator
BARNEY SPARROW
Activity code
N01
Funding institute
NIH
Fiscal year
2024
Award amount
$544,131
Award type
Project period
2017-09-26 → 2025-09-25