# MIRA: Atropisomerism as an inspiration for drug discovery and new chemistry

> **NIH NIH R35** · STATE UNIVERSITY NEW YORK STONY BROOK · 2024 · $187,494

## Abstract

Project Summary and Abstract
Obtaining selective small molecule inhibitors is a common bottleneck in drug discovery. The challenge of
selectivity is exemplified by kinase inhibitors (KIs), as high active site conservation across the kinome has
hindered the development of highly selective KIs. While there are 50+ FDA approved KIs, the majority inhibit
many kinases, leading to adverse events in patients and limiting their use as tool compounds. Recently, chemists
have implemented ‘selectivity filters’ that engage non-conserved features of a target to obtain selectivity,
however, the generality of these approaches is limited, as they rely on rare occurrences. Over the past 5 years
our group has been evaluating atropisomerism as a potentially general ‘selectivity filter’. Atropisomerism is a
form of chirality that arises from hindered rotation about a bond where the rotational conformers are enantiomers.
Depending on the degree of hindrance to bond rotation, atropisomers can exist as stable or unstable
enantiomers. Many drugs exist as unstable atropisomers yet bind their biological targets in an atropisomer-
specific manner. We have shown that analogs of promiscuous compounds that are ‘locked’ into a single
atropisomeric conformation possess improved target selectivity and have leveraged this to obtain highly selective
inhibitors of several kinases. To understand the origin of this selectivity, we analyzed over 100 kinase/small
molecule co-crystal structures and observed that the bulk of dihedral conformational space about the axis was
sampled by different kinases, and that a major driver of selectivity in our previous work was the preorganization
of the axis into a narrow ‘target-preferred’ conformational range. This led us to hypothesize that target selectivity
can be rapidly programmed into promiscuous scaffolds via preorganization of a prospective atropisomeric axis
into a specific target’s preferred dihedral conformations. We are evaluating this in the context of diverse
pharmaceutically privileged scaffolds, both dependent and independent of stable atropisomerism. A second long-
term goal of our research program is the development of new broadly applicable atroposelective methodologies
that allow for direct access to diverse classes of pharmaceutically relevant atropisomers. Over the past 5 years
our group has developed atroposelective variants of nucleophilic aromatic substitution, electrophilic aromatic
substitution and vicarious nucleophilic substitution, allowing for enantioselective access to diverse atropisomeric
scaffolds including biaryls, heterobiaryls, diarylethers, and diarylamines. Moving forward we plan to continue this
work and extend these reactivities directly to pharmaceutical scaffolds such as those seen in AMG-510 and
Bosutinib. We will also extend our atroposelective toolbox to include new reactivities such as atroposelective
cyclization and radical additions.

## Key facts

- **NIH application ID:** 11265034
- **Project number:** 7R35GM124637-09
- **Recipient organization:** STATE UNIVERSITY NEW YORK STONY BROOK
- **Principal Investigator:** Jeffrey Louis Gustafson
- **Activity code:** R35 (R01, R21, SBIR, etc.)
- **Funding institute:** NIH
- **Fiscal year:** 2024
- **Award amount:** $187,494
- **Award type:** 7
- **Project period:** 2017-08-01 → 2027-07-31

## Primary source

NIH RePORTER: https://reporter.nih.gov/project-details/11265034

## Citation

> US National Institutes of Health, RePORTER application 11265034, MIRA: Atropisomerism as an inspiration for drug discovery and new chemistry (7R35GM124637-09). Retrieved via AI Analytics 2026-05-23 from https://api.ai-analytics.org/grant/nih/11265034. Licensed CC0.

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