MimicMaker: an integrated platform for identifying relevant mimics of T cell antigens

NIH RePORTER · TR · R21 · $434,500 · view on reporter.nih.gov ↗

Abstract

SUMMARY Advances in immunology are revolutionizing medicine. The last 10-20 years have seen the rapid development of a range of transformative immunotherapies, with numerous others on the horizon, including new precision and personalized therapies for cancer and infectious disease. Advances in immunology are also powering new ways to address health conditions that emerge from immune dysfunction or dysregulation. Many immunotherapies center on the cellular arm of the adaptive immune system. In cellular immunity, T cells use their αβ T cell receptors (TCRs) to recognize small peptides (or “epitopes”) bound and presented by class I or class II major histocompatibility complex (MHC) proteins. While specificity is a hallmark of T cell recognition, TCRs are also broadly cross-reactive. The biological imperative for TCR cross-reactivity results from the limited size of an individual’s T cell repertoire compared to the vastly larger number of potential epitopes, as well as the need for T cells to recognize self for positive selection and homeostasis. However, TCR cross-reactivity also poses substantial risks for new and existing immunotherapies and leads to autoimmunity and cellular rejection of transplanted organs. TCR cross-reactivity can almost always be ascribed to the concept of molecular mimicry, where cross-recognized peptides share key structural and physical features. However, mimicry is frequently obscured behind structural and physicochemical complexities. These complexities have generally prevented the prospective identification of mimics of T cell epitopes, greatly complicating derisking and pre-clinical testing in immunotherapy and hindering our ability to address the underlying immunology of T cell driven autoimmunity and transplant rejection. Indeed, molecular mimics have traditionally only been identified and understood after cross-recognition – often in the form of a clinical presentation or complication – is observed. To address this major limitation in t

Key facts

NIH application ID
11358771
Project number
1R21TR006240-01
Recipient
UNIVERSITY OF NOTRE DAME
Principal Investigator
Brian M Baker
Activity code
R21
Funding institute
TR
Fiscal year
2026
Award amount
$434,500
Award type
1
Project period
2026-05-01T00:00:00 → 2028-04-30T00:00:00