# Ultrahigh-resolution and single-molecule stimulated Raman scattering (SRS) microscopy

> **NIH NIH R01** · COLUMBIA UNIV NEW YORK MORNINGSIDE · 2020 · $315,437

## Abstract

Project summary
 Super-resolution optical microscopy promises to revolutionize biological imaging, as it enables non-
invasive interrogation at molecular scale. Indeed, the emergence of super-resolution fluorescence microscopy
has quickly impacted the way biologists study cells and subcellular phenomenon.
 However, super-resolution fluorescence microscopy has fundamental limitations due to the use the
fluorescence as contrast mechanism. In particular, it has three major limitations: (1) it cannot reveal chemical
composition of the sample; (2) it cannot interrogate small biomolecules due to the relatively bulky fluorescent
tags; (3) it cannot image a large number of targets due to the color barrier (only 2~5 fluorescent colors can be
practically resolved).
The goal of this project is to develop a novel super-resolution imaging platform by exploiting stimulated
Raman scattering (SRS) as the contrast mechanism. During the past 10 years since its invention in 2008, SRS
microscopy has made widespread impact in biomedical imaging. Being a chemically sensitive method, SRS is
well known for its label-free chemical analysis in a quantitative manner. With the recent development of tiny
bio-orthogonal tags such as alkynes, SRS has been proven successful in interrogating a wide spectrum of
small biomolecules such as lipids, glucose, amino acids, and drugs. Very recently, novel vibrational dye
palettes with fine spectral resolution have been reported to achieve super-multiplex electronic pre-resonance
(epr) SRS imaging of more than 20 targets simultaneously. Importantly, all these utilizes of SRS microscopy is
limited by light diffraction.
 With SRS being a perfectly complementary contrast mechanism to the prevalent fluorescence, the
current proposal aims to develop the necessary methods to bring SRS microscopy to the realm of super
resolution. (1) How to improve the resolution for general chemical imaging and small biomolecule imaging; (2)
how to break the diffraction limit of the super-multiplex epr-SRS imaging; (3) how to develop the matching
vibrational dyes for single molecule SRS.
 Towards these goals, we had laid out a systematic plan as to how to crystallize this concept into a
powerful technology platform. An inter-disciplinary approach has been planned out including instrumentation
development, computational imaging, and novel probes synthesis. In Aim 1, we will develop and build new
instrumentation. In Aim 2, we will explore new computational algorithm. In Aim 3, we will design next-
generation vibrational probes. If successfully implemented, we will establish a transformative platform. The
resulting super-resolution chemical imaging would find wide applications in systematically unraveling complex
biological systems such as neuroscience, immunology and cancer biology for basic research, disease
diagnostics and precision medicine.
1

## Key facts

- **NIH application ID:** 9899269
- **Project number:** 5R01GM132860-02
- **Recipient organization:** COLUMBIA UNIV NEW YORK MORNINGSIDE
- **Principal Investigator:** Wei Min
- **Activity code:** R01 (R01, R21, SBIR, etc.)
- **Funding institute:** NIH
- **Fiscal year:** 2020
- **Award amount:** $315,437
- **Award type:** 5
- **Project period:** 2019-04-01 → 2023-03-31

## Primary source

NIH RePORTER: https://reporter.nih.gov/project-details/9899269

## Citation

> US National Institutes of Health, RePORTER application 9899269, Ultrahigh-resolution and single-molecule stimulated Raman scattering (SRS) microscopy (5R01GM132860-02). Retrieved via AI Analytics 2026-05-23 from https://api.ai-analytics.org/grant/nih/9899269. Licensed CC0.

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