# Genes for non-syndromic congenital heart disease

> **NIH NIH P01** · ALBERT EINSTEIN COLLEGE OF MEDICINE · 2020 · $374,455

## Abstract

ABSTRACT – PROJECT 2 
Congenital heart defects (CHDs) are the most common serious birth defect and a leading cause of infant 
mortality. Affected individuals who survive infancy require substantial medical care and experience lifelong 
morbidity and early mortality. Despite their prevalence and impact upon public health, the etiology of CHDs is 
poorly understood. This gap in understanding limits our ability to prevent CHDs, assess risk and predict 
outcome. Our long-term goal is to address this gap by defining the genetic basis of CTRDs and using this 
information to develop preventive measures and provide precise medical management based on genotype. As 
CHDs are a heterogeneous group of conditions, we have focused our studies on subsets of CHDs for which 
there is evidence of a shared genetic basis. The studies proposed in this application are focused on cases 
with conotruncal and pharyngeal arch anomalies (conotruncal and related defects, CTRDs) that comprise at 
least 36% of all CHDs and are a prominent feature of the 22q11.2 deletion syndrome (22q11DS). To address 
the gap in our understanding of the causes of CTRDs, we have conducted both SNP- and CNV-based 
genomewide association studies as part of our current P01. While our studies of individual variants have been 
largely negative, our analyses of genes and gene-sets provide new insights regarding the contribution of 
common and rare inherited genetic variants to CTRDs. Hence, our continued efforts to address this gap will 
focus on identification of gene-sets that influence the risk of CTRDs. Specifically, based on the results from 
our studies as well as recently published findings, we hypothesize that: (1) CTRDs are influenced by the full 
range of variability (rare to common; de novo and inherited) in relevant gene-sets; (2) the number of disease- 
related variants within these gene-sets varies directly with CTRD severity; and (3) gene-sets associated with 
CTRDs in nonsyndromic individuals are also associated with CTRDs in individuals with the 22q11DS. To test 
our hypotheses, we propose studies that will: (1) define gene-sets that influence the risk of CTRDs via 
common inherited genetic variants across the genome, (2) define gene-sets that influence the risk of CTRDs 
via rare genetic variants across the exome, and (3) establish the genetic basis of the full clinical spectrum of 
CTRDs. These studies will use existing array (n= 1,105 trios and 406/2,967 cases/controls) and whole exome 
sequence data (n= 750 trios) from cases with severe CTRDs, as well as newly generated data for cases with 
mild CTRDs (isolated aortic arch anomalies, n=400). We will assess gene-sets derived from human disease 
loci, developmental biological networks and expression data in collaboration with Projects 1 and 3. A novel 
application of genetic risk scores will be used to identify the component genes and variants that drive the 
association between CTRDs and each gene-set. We anticipate that this wor...

## Key facts

- **NIH application ID:** 9938645
- **Project number:** 5P01HD070454-12
- **Recipient organization:** ALBERT EINSTEIN COLLEGE OF MEDICINE
- **Principal Investigator:** Elizabeth Goldmuntz
- **Activity code:** P01 (R01, R21, SBIR, etc.)
- **Funding institute:** NIH
- **Fiscal year:** 2020
- **Award amount:** $374,455
- **Award type:** 5
- **Project period:** 2011-09-24 → 2022-06-30

## Primary source

NIH RePORTER: https://reporter.nih.gov/project-details/9938645

## Citation

> US National Institutes of Health, RePORTER application 9938645, Genes for non-syndromic congenital heart disease (5P01HD070454-12). Retrieved via AI Analytics 2026-05-23 from https://api.ai-analytics.org/grant/nih/9938645. Licensed CC0.

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