# Methods and Software for High-dimensional Risk Prediction Research

> **NIH NIH R01** · UNIVERSITY OF FLORIDA · 2020 · $255,356

## Abstract

Project Summary
The use of human genome discoveries and other established risk predictors for early disease prediction is an
essential step towards precision medicine. However, the task of developing clinically useful risk prediction
models is hampered by the present state of evidence, in which currently known risk predictors are insufficient
for accurately predicting most human diseases. With rapidly evolving high-throughput technologies and ever-
decreasing costs, it becomes feasible to collect diverse types of omic data in large-scale studies. While the
multi-level omic data generated from these studies hold great promise for novel predictors to further improve
existing models, the high-dimensionality of omic data, the heterogeneous etiology of human diseases, and the
complex inter-relationships among various levels of omic data bring tremendous analytic challenges. New
methods and software are in great need to address these challenges, and to facilitate ongoing and future high-
dimensional risk prediction research. The goal of this application is thus to complete the development of a
random field (RF) framework and software for high-dimensional risk prediction research using omic data, and
then apply the framework to Alzheimer's disease (AD). The proposed research will integrate a kernel function
and a spatial adaptive lasso into RF, making it applicable for high-dimensional data with a large number of
predictors. Moreover, the new framework is able to utilize the family design to address several important issues
(e.g., genetic heterogeneity) in predicting complex diseases, and will adopt a cross-diffusion process to
integrate information from different levels of omic data. Based on preliminary simulation results, our central
hypothesis is that the proposed framework attains a more accurate and robust performance than existing
methods. The successful completion of this project should address analytical challenges faced by massive
amounts of omic data, and advance the methodology and software development for high-dimensional risk
prediction in general. The application of the new methods and software to large-scale AD datasets could also
lead to novel AD risk prediction models that could be further replicated and investigated through collaborative
research.

## Key facts

- **NIH application ID:** 9975910
- **Project number:** 5R01LM012848-03
- **Recipient organization:** UNIVERSITY OF FLORIDA
- **Principal Investigator:** Qing Lu
- **Activity code:** R01 (R01, R21, SBIR, etc.)
- **Funding institute:** NIH
- **Fiscal year:** 2020
- **Award amount:** $255,356
- **Award type:** 5
- **Project period:** 2018-07-01 → 2022-05-31

## Primary source

NIH RePORTER: https://reporter.nih.gov/project-details/9975910

## Citation

> US National Institutes of Health, RePORTER application 9975910, Methods and Software for High-dimensional Risk Prediction Research (5R01LM012848-03). Retrieved via AI Analytics 2026-05-24 from https://api.ai-analytics.org/grant/nih/9975910. Licensed CC0.

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