Elucidating the genomic determinants of outcomes in idiopathic pulmonary fibrosis

NIH RePORTER · NIH · K23 · $182,736 · view on reporter.nih.gov ↗

Abstract

PROJECT SUMMARY/ABSTRACT Idiopathic pulmonary fibrosis (IPF) is a rare, but devastating interstitial lung disease characterized by a progressive decline in lung function and a median survival of 3-5 years after diagnosis. Despite the poor prognosis, IPF follows a highly variable clinical course, whereby most patients experience gradual disease progression, some demonstrate relative stability and a small group dies from rapidly progressive disease. Anti- fibrotic therapies were recently approved for the treatment of IPF, but it remains unclear which IPF phenotypes derive the most benefit. Recent advances in genomic technology provide an excellent opportunity to improve our understanding of IPF progression and treatment response. In this proposal, I aim to take advantage of these genomic advances to identify single nucleotide polymorphisms (SNPs) linked to relevant IPF outcomes. I will do this using DNA samples collected from patients enrolled in past and current IPF clinical trials, along with two large IPF registries. My central hypothesis is that patients genetically predisposed to death, disease progression and treatment response can be prospectively identified using SNPs linked to these endpoints. I will first conduct a genome-wide survival analysis to identify SNPs linked to early IPF mortality. I will then genotype relevant susceptibility and outcome-associated SNPs in several clinical trial datasets to determine whether they predict relevant trial endpoints, including pulmonary function decline and hospitalization. Finally, I will genotype SNPs at potential pharmacogenetic loci to determine whether such SNPs modulate the response to anti-fibrotic therapy. Successful completion of this proposal will lead to the development of customized SNP chips that inform the design of IPF clinical trials and has a high potential to identify novel genes that may one day serve as therapeutic targets. My long-term career goal is to incorporate genetics into clinical decision-making in patients with IPF, specifically clinical trial enrollment and therapeutic selection. To make progress towards this goal, the relevant genetic markers with which to stratify IPF cohorts for risk-stratification and pharmacogenetic testing must first be identified. To do this, a career development has been devised that will provide outstanding mentorship, hands-on laboratory experience and additional training in genetic epidemiology, statistical genetics and bioinformatics. I will draw mentorship from leaders in the field of genomics, interstitial lung disease and clinical and translational investigation. An advisory committee composed of individuals with diverse backgrounds has been assembled to provide specific guidance with regard to clinical registry and biorepository management, laboratory training, statistical genetics and outcomes modeling. This K23 award is vital to successful completion of this proposal and timely execution of my career development plan, as it will provi...

Key facts

NIH application ID
9980986
Project number
5K23HL138190-04
Recipient
UNIVERSITY OF CALIFORNIA AT DAVIS
Principal Investigator
Justin M Oldham
Activity code
K23
Funding institute
NIH
Fiscal year
2020
Award amount
$182,736
Award type
5
Project period
2017-09-01 → 2022-08-31