Bioinformatics Support for Toxicogenomics Technologies

NIH RePORTER · NIH · N01 · $200,000 · view on reporter.nih.gov ↗

Abstract

Projects needing support for toxicogenomic analysis included 1) support for circulating cell free DNA (ccfDNA); 2) support for Mouse Aging study by providing dendogram and SNP analysis for 10 strains of mice; 3) support epigenomic analysis of DNA methylation of arsenic-related changes in an in vitro model of cellular transformation; 4) analysis of 3D spheroids of HepaRG. Differential gene expression from TempO-Seq data was performed with fold chagnes and pvalues; 5) support was provided for analysis of microarray toxicogenomic data for placenta and liver from animals exposed to PFAS compounds; 6) support was provided for analysis of AFFF (aqueous film-forming foams) fpr comparative analysis of toxicity after in vitro exposures in HTT assays.

Key facts

NIH application ID
10596964
Project number
273201700001C-P00009-9999-3
Recipient
SCIOME, LLC
Principal Investigator
RUCHIR SHAH
Activity code
N01
Funding institute
NIH
Fiscal year
2022
Award amount
$200,000
Award type
Project period
2017-03-24 → 2022-09-23