High-content microscopy platform for multiplex perturbation/multiplex readout studies

NIH RePORTER · NIH · R35 · $152,999 · view on reporter.nih.gov ↗

Abstract

NOT-GM-24-021 – ABSTRACT – HART Highly multiplexed genetic perturbations offer huge potential beyond fitness screens. High throughput microscopy offers a tractable method for combining complex genetic perturbation with multiparameter functional assays. Here we propose the purchase of a Nikon Eclipse Ji microscopy system to facilitate complex data collection to decipher the complexity and redundancy of mammalian signaling pathways. Using our next- generation CRISPR/Cas12a polygenic knockout system, we combine custom CRISPR arrays targeting signaling effectors and cell surface “barcodes”, then use immunofluorescence readouts of cell state across dozens of targets – two to four per well in a 96 well plate -- to understand the dynamics of cell signaling.

Key facts

NIH application ID
11098303
Project number
3R35GM130119-07S1
Recipient
UNIVERSITY OF TX MD ANDERSON CAN CTR
Principal Investigator
Traver Hart
Activity code
R35
Funding institute
NIH
Fiscal year
2024
Award amount
$152,999
Award type
3
Project period
2018-08-01 → 2028-08-31